Distributed and Sequential Algorithms for Bioinformatics

1. Auflage 2015
ISBN: 978-3-319-24964-3
Verlag: Springer International Publishing

Buch, Englisch, Band 23, 367 Seiten, Format (B × H): 160 mm x 241 mm, Gewicht: 7037 g

Reihe: Computational Biology

This unique textbook/reference presents unified coverage of bioinformatics topics relating to both biological sequences and biological networks, providing an in-depth analysis of cutting-edge distributed algorithms, as well as of relevant sequential algorithms. In addition to introducing the latest algorithms in this area, more than fifteen new distributed algorithms are also proposed. Topics and features: reviews a range of open challenges in biological sequences and networks; describes in detail both sequential and parallel/distributed algorithms for each problem; suggests approaches for distributed algorithms as possible extensions to sequential algorithms, when the distributed algorithms for the topic are scarce; proposes a number of new distributed algorithms in each chapter, to serve as potential starting points for further research; concludes each chapter with self-test exercises, a summary of the key points, a comparison of the algorithms described, and a literature review.

Zielgruppe

Graduate

Autoren/Hrsg.

Erciyes, Kayhan

Fachgebiete

• Mathematik | Informatik EDV | Informatik Programmierung | Softwareentwicklung Algorithmen & Datenstrukturen
• Mathematik | Informatik EDV | Informatik Angewandte Informatik Bioinformatik
• Naturwissenschaften Biowissenschaften Angewandte Biologie Bioinformatik

Inhaltsverzeichnis

Introduction.-  Part I: Background.-  Introduction to Molecular Biology.- Graphs, Algorithms and Complexity.- Parallel and Distributed Computing.-  Part II: Biological Sequences.-  String Algorithms.- Sequence Alignment.- Clustering of Biological Sequences.- Sequence Repeats.- Genome Analysis.-  Part III: Biological Networks.-  Analysis of Biological Networks.- Cluster Discovery in Biological Networks.- Network Motif Search.- Network Alignment.- Phylogenetics.- Epilogue.

Über Autor(innen)

Dr. K. Erciyes is Rector of Izmir University, Turkey, where he also serves as a professor in the Computer Engineering Department. His other publications include the Springer title Distributed Graph Algorithms for Computer Networks .