User-Level Workflow Design

A Bioinformatics Perspective
Erscheinungsjahr 2013
ISBN: 978-3-642-45388-5
Verlag: Springer

Buch, Englisch, 223 Seiten, Format (B × H): 155 mm x 235 mm, Gewicht: 382 g

Reihe: Programming and Software Engineering

The continuous trend in computer science to lift programming to higher abstraction levels increases scalability and opens programming to a wider public. In particular, service-oriented programming and the support of semantics-based frameworks make application development accessible to users with almost no programming expertise. This monograph establishes requirement-centric scientific workflow design as an instance of consequent constraint-driven development. Requirements formulated in terms of user-level constraints are automatically transformed into running applications using temporal logic-based synthesis technology. The impact of this approach is illustrated by applying it to four very different bioinformatics scenarios: phylogenetic analysis, the dedicated GeneFisher-P scenario, the FiatFlux-P scenario, and microarray data analyses.

Zielgruppe

Research

Autoren/Hrsg.

Lamprecht, Anna-Lena

Fachgebiete

• Mathematik | Informatik EDV | Informatik Programmierung | Softwareentwicklung Programmierung: Methoden und Allgemeines
• Naturwissenschaften Biowissenschaften Angewandte Biologie Bioinformatik
• Mathematik | Informatik EDV | Informatik Angewandte Informatik Bioinformatik
• Mathematik | Informatik EDV | Informatik Programmierung | Softwareentwicklung Software Engineering Modellierung, UML, SysML

Inhaltsverzeichnis

The Bio-jETI Framework.- Phylogenetic Analysis Workflows.- GeneFisher-P.- FiatFlux-P.- Microarray Data Analysis Pipelines.