E-Book, Englisch, Band 6, 354 Seiten
Reihe: Computational Biology
Burger / Davidson / Baldock Anatomy Ontologies for Bioinformatics
1. Auflage 2007
ISBN: 978-1-84628-885-2
Verlag: Springer
Format: PDF
Kopierschutz: 1 - PDF Watermark
Principles and Practice
E-Book, Englisch, Band 6, 354 Seiten
Reihe: Computational Biology
ISBN: 978-1-84628-885-2
Verlag: Springer
Format: PDF
Kopierschutz: 1 - PDF Watermark
This book provides a timely and first-of-its-kind collection of papers on anatomy ontologies. It is interdisciplinary in its approach, bringing together the relevant expertise from computing and biomedical studies. The book aims to provide readers with a comprehensive understanding of the foundations of anatomical ontologies and the-state-of-the-art in terms of existing tools and applications. It also highlights challenges that remain today.
Autoren/Hrsg.
Weitere Infos & Material
1;Foreword;6
2;Preface;9
3;Contents;11
4;List of Contributors;13
5;Part I Existing Anatomy Ontologies for Human, Model Organisms and Plants;17
5.1;1 Anatomical Ontologies for Model Organisms: The Fungi and Animals;18
5.2;2 Plant Structure Ontology (PSO) — A Morphological and Anatomical Ontology of Flowering Plants;41
5.3;3 Anatomy for Clinical Terminology;57
5.4;4 The Foundational Model of Anatomy Ontology;72
5.5;5 Towards a Disease Ontology;131
6;Part II Engineering and Linking of Anatomy Ontologies;143
6.1;6 Ontology Alignment and Merging;144
6.2;7 COBrA and COBrA-CT: Ontology Engineering Tools;161
6.3;8 XSPAN—A Cross-Species Anatomy Network;173
6.4;9 Searching Biomedical Literature with Anatomy Ontologies;186
7;Part III Anatomy Ontologies and Spatio-Temporal Atlases;204
7.1;10 Anatomical Ontologies: Linking Names to Places in Biology;205
7.2;11 Time in Anatomy;220
7.3;12 The Edinburgh Mouse Atlas;255
7.4;13 The Smart Atlas: Spatial and Semantic Strategies for Multiscale Integration of Brain Data;272
8;Part IV Anatomy Ontologies — Modelling Principles;292
8.1;14 Modelling Principles and Methodologies – Relations in Anatomical Ontologies;293
8.2;15 Modeling Principles and Methodologies - Spatial Representation and Reasoning;310
8.3;16 CARO — The Common Anatomy Reference Ontology;330
9;Index;353
