E-Book, Englisch, 550 Seiten
Chance / Ghosh / Pye Biological and Biochemical Oscillators
1. Auflage 2014
ISBN: 978-1-4832-7119-4
Verlag: Elsevier Science & Techn.
Format: EPUB
Kopierschutz: 6 - ePub Watermark
E-Book, Englisch, 550 Seiten
ISBN: 978-1-4832-7119-4
Verlag: Elsevier Science & Techn.
Format: EPUB
Kopierschutz: 6 - ePub Watermark
Biological and Biochemical Oscillators compiles papers on biochemical and biological oscillators from a theoretical and experimental standpoint. This book discusses the oscillatory behavior, excitability, and propagation phenomena on membranes and membrane-like interfaces; two-dimensional analysis of chemical oscillators; and chemiluminescence in oscillatory oxidation reactions catalyzed. The problems associated with the computer simulation of oscillating systems; mechanism of single-frequency glycolytic oscillations; excitation wave propagation during heart fibrillation; and biochemical cycle of excitation are also elaborated. This compilation likewise covers the physiological rhythms in Saccharomyces cerevisiae populations; integral and indissociable property of eukaryotic gene-action systems; and role of actidione in the temperature jump response of the circadian rhythm in Euglena gracilis. This publication is valuable to biochemists interested in biochemical and biological oscillations.
Autoren/Hrsg.
Weitere Infos & Material
1;Front Cover;1
2;Biological and Biochemical Oscillators;4
3;Copyright Page;5
4;Table of Contents;6
5;CONTRIBUTORS;10
6;PREFACE;15
7;INTRODUCTION;21
8;Benno Hess;21
9;PART I: OSCILLATOR THEORY;23
9.1;CHAPTER 1. OSCILLATORY BEHAVIOR, EXCITABILITY AND PROPAGATION PHENOMENA ON MEMBRANES AND MEMBRANE-LIKE INTERFACES;25
9.1.1;I. One process systems;25
9.1.2;II. Multi-process Systems;36
9.1.3;III. Examples of physico-chemical oscillatory systems;40
9.1.4;REFERENCES;47
9.2;CHAPTER 2. TWO-DIMENSIONAL ANALYSIS OF CHEMICAL OSCILLATORS;49
9.2.1;Introduction;49
9.2.2;Results;51
9.2.3;Discussion;57
9.2.4;REFERENCES;58
9.3;CHAPTER 3. STABILITY PROPERTIES OF METABOLIC PATHWAYS WITH FEEDBACK INTERACTIONS;59
9.3.1;Formulation of the System;60
9.3.2;Conditions for the Existence of the Stationary Solution;62
9.3.3;Local Stability of the Stationary Solution;63
9.3.4;Some Results on the Existence of Stable Limit Cycles;74
9.3.5;ACKNOWLEDGEMENTS;76
9.3.6;REFERENCES;77
10;PART II: OSCILLATIONS IN DEFINED CHEMICAL AND BIOCHEMICAL SYSTEMS;79
10.1;CHAPTER 4. SOME EXPERIMENTS OF A CHEMICAL PERIODIC REACTION IN LIQUID PHASE;81
10.1.1;REFERENCES;87
10.2;CHAPTER 5. A STUDY OF A SELF-OSCILLATORY CHEMICAL REACTION I. THE AUTONOMOUS SYSTEM;89
10.2.1;1. Reaction Scheme;90
10.2.2;2. Dependence of Reaction Behavior on Parameters;92
10.2.3;3. Evolution of the Oscillation Behavior in a Closed System;95
10.2.4;REFERENCES;97
10.3;CHAPTER 6. A STUDY OF A SELF-OSCILLATORY CHEMICAL REACTION II. INFLUENCE OF PERIODIC EXTERNAL FORCE;99
10.3.1;Introduction;99
10.3.2;Experimental Procedure;101
10.3.3;Results and Discussion;101
10.3.4;REFERENCES;106
10.4;CHAPTER 7. A STUDY OF A SELF-OSCILLATORY CHEMICAL REACTION III. SPACE BEHAVIOR;107
10.4.1;Experimental Data;108
10.4.2;Discussion;111
10.4.3;REFERENCES;113
10.5;CHAPTER 8. CHEMILUMINESCENCE IN OSCILLATORY OXIDATION REACTIONS CATALYZED BY HORSERADISH PEROXIDASE;115
10.5.1;Experimental;116
10.5.2;Results and Discussion;116
10.5.3;Conclusion;124
10.5.4;REFERENCES;126
10.6;CHAPTER 9. A SIPHON MODEL FOR OSCILLATORY REACTIONS IN THE REDUCED PYRIDINE NUCLEOTIDE, O2 AND PEROXIDASE SYSTEM;127
10.6.1;REFERENCES;132
10.7;CHAPTER 10. DAMPING OF MITOCHONDRIAL VOLUME OSCILLATIONS BY PROPRANOLOL AND RELATED COMPOUNDS;133
10.7.1;Methods;134
10.7.2;Results;134
10.7.3;Discussion;138
10.7.4;Acknowledgements;141
10.7.5;References;141
11;PART Ill: GLYCOLYTIC OSCILLATIONS;143
11.1;CHAPTER 11. THE CONTROL THEORETIC APPROACH TO THE ANALYSIS OF GLYCOLYTIC OSCILLATORS;145
11.1.1;I. INTRODUCTION;145
11.1.2;II. THE CONTROL THEORETIC APPROACH;146
11.1.3;III. THEORETICAL ASPECTS OF BIOCHEMICAL OSCILLATORS;150
11.1.4;IV. STUDY OF GLYCOLYTIC OSCILLATIONS;167
11.1.5;V. DISCUSSION;185
11.1.6;VI. CONCLUSIONS AND SUMMARY;187
11.1.7;ACKNOWLEDGMENTS;191
11.1.8;REFERENCES;192
11.2;CHAPTER 12. PROBLEMS ASSOCIATED WITH THE COMPUTER SIMULATION OF OSCILLATING SYSTEMS;195
11.2.1;Method of Simulation;196
11.2.2;The Model System;198
11.2.3;Discussion;200
11.2.4;Acknowledgments;203
11.2.5;References;203
11.3;CHAPTER 13. THE EFFECT OF FRUCTOSE DIPHOSPHATE ACTIVATION OF PYRUVATE KINASE ON GLYCOLYTIC OSCILLATIONS IN BEEF HEART SUPERNATANT: AN EXPERIMENTAL AND SIMULATION STUDY;205
11.3.1;REFERENCES;214
11.4;CHAPTER 14. ON THE MECHANISM OF SINGLE-FREQUENCY GLYCOLYTIC OSCILLATIONS;215
11.4.1;Model of the PFK-ADK System;220
11.4.2;Model of the Glycolytic Self-Oscillator;227
11.4.3;Investigation of the Model;229
11.4.4;Discussion;236
11.4.5;Acknowledgements;237
11.4.6;References;237
11.5;CHAPTER 15. KINETICS OF YEAST PHOSPHOFRUCTOKINASE AND THE GLYCOLYTIC OSCILLATOR;239
11.5.1;References;245
11.6;CHAPTER 16. SUBSTRATE CONTROL OF GLYCOLYTIC OSCILLATIONS;247
11.6.1;REFERENCES;259
11.7;CHAPTER 17. CONTROL MECHANISM OF GLYCOLYTIC OSCILLATIONS;261
11.7.1;REFERENCES;269
11.8;CHAPTER 18. COMPONENT STRUCTURE OF OSCILLATING GLYCOLYSIS;271
11.8.1;ACKNOWLEDGEMENT;285
11.8.2;REFERENCES;285
11.9;CHAPTER 19. GLYCOLYTIC OSCILLATIONS IN CELLS AND EXTRACTS OF YEAST–SOME UNSOLVED PROBLEMS;287
11.9.1;INTRODUCTION;287
11.9.2;MECHANISM OF THE GLYCOLYTIC OSCILLATIONS IN YEAST;288
11.9.3;CONCLUSION;300
11.9.4;ACKNOWLEDGEMENTS;301
11.9.5;REFERENCES;301
11.10;CHAPTER 20. SYNCHRONIZATION PHENOMENA IN OSCILLATIONS OF YEAST CELLS AND ISOLATED MITOCHONDRIA;303
11.10.1;DISCUSSION;313
11.10.2;REFERENCES;317
12;PART IV: OSCILLATIONS IN TISSUES;319
12.1;CHAPTER 21. OSCILLATING CONTRACTILE STRUCTURES FROM INSECT FIBRILLAR MUSCLE;321
12.1.1;REFERENCES;326
12.2;CHAPTER 22. KINETIC MODEL OF MUSCLE CONTRACTION;329
12.2.1;Description of the Model;329
12.2.2;Mathematical Formulation;330
12.2.3;Stationary Contraction;332
12.2.4;Estimation of the Parameters;333
12.2.5;Isotonic Contraction;334
12.2.6;Stretched Muscle Behavior;337
12.2.7;Isometric Contraction;339
12.2.8;Discussion;342
12.2.9;Acknowledgement;345
12.2.10;References;345
12.3;CHAPTER 23. EXCITATION WAVE PROPAGATION DURING HEART FIBRILLATION;347
12.3.1;1. Fibrillation of the heart;347
12.3.2;2. Experimental fibrillation;347
12.3.3;3. Physiological theories of fibrillation;348
12.3.4;4. The main targets of the analysis;348
12.3.5;5. The principal equations;349
12.3.6;6. Approach to the problem;350
12.3.7;7. Axioms;351
12.3.8;8. One-dimensional excitation propagation;352
12.3.9;9. Results;353
12.3.10;10. Discussion;357
12.3.11;SUMMARY;358
12.3.12;REFERENCES;359
12.4;CHAPTER 24. CONFORMATIONAL OSCILLATIONS OF PROTEIN MACROMOLECULES OF ACTOMYOSIN COMPLEX;361
12.4.1;REFERENCES;362
12.5;CHAPTER 25. OSCILLATIONS IN MUSCLE CREATINE KINASE ACTIVITY;365
12.5.1;Methods;366
12.5.2;Results;367
12.5.3;Discussion;377
12.5.4;Summary;378
12.5.5;References;378
12.6;CHAPTER 26. OSCILLATION OF SODIUM TRANSPORT ACROSS A LIVING EPITHELIUM;381
12.6.1;REFERENCES;389
12.6.2;ACKNOWLEDGEMENTS;389
12.7;CHAPTER 27. BIOCHEMICAL CYCLE OF EXCITATION;391
12.7.1;Summary;391
12.7.2;REFERENCES;403
12.8;CHAPTER 28. POSSIBLE PATHWAYS FOR THE SUCCINATE CONCENTRATION BURST IN THE ACTIVE METABOLIC STATE;407
12.8.1;Abstract;407
12.8.2;References;412
13;PART V: OSCILLATIONS IN GROWING CELL POPULATIONS;415
13.1;CHAPTER 29. UNDAMPED OSCILLATIONS OCCURRING IN CONTINUOUS CULTURES OF BACTERIA;417
13.1.1;Introduction;417
13.1.2;Low Frequency Oscillations in Respiration Rate;418
13.1.3;High Frequency Oscillations;423
13.1.4;Summary;427
13.1.5;References;427
13.2;CHAPTER 30. STABLE SYNCHRONY OSCILLATIONS IN CONTINUOUS CULTURES OF SACCHAROMYCES CEREVISIAE UNDER GLUCOSE LIMITATION;429
13.2.1;REFERENCES;435
13.3;CHAPTER 31. PHYSIOLOGICAL RHYTHMS IN SACCHAROMYCES CEREVISIAE POPULATIONS;437
13.3.1;I. Time dependent excretion of material absorbing at 260mµ;438
13.3.2;II. Time-dependent lag phase;439
13.3.3;III. Time-dependent RD-lability;441
13.3.4;IV. Time-dependent glucose uptake;443
13.3.5;REFERENCES;445
13.3.6;ACKNOWLEDGEMENTS;445
13.4;CHAPTER 32. LONG- AND SHORT-PERIOD OSCILLATIONS IN A MYXOMYCETE WITH SYNCHRONOUS NUCLEAR DIVISIONS;447
13.4.1;Summary;463
13.4.2;REFERENCES;464
13.5;CHAPTER 33. OSCILLATIONS IN THE EPIGENETIC SYSTEM: BIOPHYSICAL MODEL OF THE ß-GALACTOSIDASE CONTROL SYSTEM;467
13.5.1;The Model;467
13.5.2;Results;471
13.5.3;Discussion;474
13.5.4;REFERENCES;475
14;CHAPTER VI: CIRCADIAN OSCILLATIONS;477
14.1;CHAPTER 34. THE INVESTIGATION OF OSCILLATORY PROCESSES BY PERTURBATION EXPERIMENTS I. THE DYNAMICAL INTERPRETATION OF PHASE SHIFTS;479
14.1.1;Phase of Observable Rhythm;480
14.1.2;The State of the Driving Oscillator;481
14.1.3;Degrees of Freedom of the Perturbation;481
14.1.4;Cophase;482
14.1.5;Geometrical Description of Dynamics in Standard Dark Environment;483
14.1.6;Modified Dynamics During Perturbation;484
14.1.7;Resetting Maps, In abstracto;485
14.1.8;Resetting Maps, In Fact;486
14.1.9;Interpretation of Empirical Generalizations;487
14.1.10;Testable Consequences;491
14.1.11;Acknowledgments;494
14.1.12;REFERENCES;494
14.2;CHAPTER 35. THE INVESTIGATION OF OSCILLATORY PROCESSES BY PERTURBATION EXPERIMENTS II. A SINGULAR STATE IN THE CLOCK-OSCILLATION;497
14.2.1;1. Introduction;497
14.2.2;2. Perturbation and Phase Shifts;498
14.2.3;3. The Basic Oscillator "State";499
14.2.4;4. Postulates;500
14.2.5;5. Predictions;500
14.2.6;6. Experimental Format;501
14.2.7;7. Controls;503
14.2.8;8. The Helicoid of Cophase;504
14.2.9;9. Isochron Contours;506
14.2.10;10. What This Experiment Excludes;506
14.2.11;11. The Singularity: Criterion One;507
14.2.12;12. The Singularity: Criterion Two;508
14.2.13;13. The Question of : Stability versus Instability Dead versus Scattered Clocks Initiation versus Synchronization;510
14.2.14;14. A Criterion Distinguishing between Hypotheses A and B;512
14.2.15;15. Limit Cycles;515
14.2.16;16. Conclusions;515
14.2.17;ACKNOWLEDGEMENTS;519
14.2.18;REFERENCES;519
14.3;CHAPTER 36. THE CIRCADIAN OSCILLATION: AN INTEGRAL AND UNDISSOCIABLE PROPERTY OF EUKARYOTIC GENE-ACTION SYSTEMS;521
14.3.1;Acknowledgements;529
14.3.2;References;529
14.4;CHAPTER 37. RESPIRATION DEPENDENT TYPES OF TEMPERATURE COMPENSATION IN THE CIRCADIAN RHYTHM OF Euglena gracilis;531
14.4.1;REFERENCES;539
14.5;CHAPTER 38. THE ROLE OF ACTIDIONE IN THE TEMPERATURE JUMP RESPONSE OF THE CIRCADIAN RHYTHM IN Euglena gracilis;541
14.5.1;REFERENCES;547
15;SUBJECT INDEX;549
CONTRIBUTORS
Murray J. Achs, The Johnson Research Foundation, University of Pennsylvania, Philadelphia, Pennsylvania 19174
James E. Allen, Department of Biochemistry, School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19174
A. Betz, Institut für Molekulare Biologie, 3301 Stöckheim/Braunschweig, West Germany
Arnold Boiteux, Max-Planck-Institut für Ernährungsphysiologie, Dortmund, West Germany
Klaus Brinkmann, Institut für Molekulare Biologie, 3301 Stöckheim/Braunschweig, West Germany
Heinrich-Gustav Busse, Institut für Molekulare Biologie, Biochemie und Biophysik, Stöckheim/Braunschweig, West Germany
Britton Chance, The Johnson Research Foundation, University of Pennsylvania, Philadelphia, Pennsylvania 19174
E.M. Chance, Department of Biochemistry, University College, London, England
E.P. Chetverikova, Institute of Biophysics, Academy of Sciences of the USSR, Puschino, Moscow Region, USSR
Hans Degn, The Johnson Research Foundation, University of Pennsylvania, Philadelphia, Pennsylvania 19174
V.I. Descherevsky, Institute of Biophysics, Academy of Sciences of the USSR, Puschino, Moscow Region, USSR
D. DeVault, The Johnson Research Foundation, University of Pennsylvania, Philadelphia, Pennsylvania 19174
C.F. Ehret, Division of Biological and Medical Research, Argonne National Laboratory, Argonne, Illinois 60439
Y.V. Evtodienko, Institute of Biophysics, Academy of Sciences of the USSR, Puschino, Moscow Region, USSR
U.F. Franck, Institut für Physikalische Chemie der Rhein.-Westf. Techn. Hochschule, Aachen, West Germany
Rene Frenkel, The Johnson Research Foundation, University of Pennsylvania, Philadelphia, Pennsylvania 19174
David Garfinkel, The Johnson Research Foundation, University of Pennsylvania, Philadelphia, Pennsylvania 19174
A.K. Ghosh, The Johnson Research Foundation, University of Pennsylvania, Philadelphia, Pennsylvania 19174
K. Hansen, Zoologisches Institut der Universität Heidelberg, Heidelberg, West Germany
D.E.F. Harrison, The Johnson Research Foundation, University of Pennsylvania, Philadelphia, Pennsylvania 19174
Benno Hess, Max-Planck-Institut für Ernährungsphysiologie, Dortmund, West Germany
Joseph Higgins, The Johnson Research Foundation, University of Pennsylvania, Philadelphia, Pennsylvania 19174
Edward Hulme, The Johnson Research Foundation, University of Pennsylvania, Philadelphia, Pennsylvania 19174
H. Kleinhans, Max-Planck-Institut für Ernährungsphysiologie, Dortmund, West Germany
W.A. Knorre, Department of Biophysics, Institute for Microbiology and Experimental Therapy, German Academy of Sciences, Berlin, 69 Jena, East Germany
M.N. Kondrashova, Institute of Biophysics, Academy of Sciences of the USSR, Puschino, Moscow Region, USSR
G. Kraepelin, Botanisches Institut der Technischen Universität, Braunschweig, West Germany
V.I. Krinsky, Institute of Biophysics, Academy of Sciences of the USSR, Puschino, Moscow Region, USSR
D. Kuschmitz, Max-Planck-Institut für Ernährungsphysiologie, Dortmund, West Germany
I.Y. Lee, The Johnson Research Foundation, University of Pennsylvania, Philadelphia, Pennsylvania 19174
Anne Lucas, The Johnson Research Foundation, University of Pennsylvania, Philadelphia, Pennsylvania 19174
L. Mela, The Johnson Research Foundation, University of Pennsylvania, Philadelphia, Pennsylvania 19174
Dieter H. Meyer, The Johnson Research Foundation, University of Pennsylvania, Philadelphia, Pennsylvania 19174
E. Kendall Pye, Department of Biochemistry, School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19174
Gus Rangazas, The Johnson Research Foundation, University of Pennsylvania, Philadelphia, Pennsylvania 19174
Howard Rasmussen, Department of Biochemistry, School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19174
J.C. Rüegg, Department of Cell-Physiology, Ruhr University, Bochum, and Max-Planck-Institute for Medical Research, Heidelberg, West Germany
W. Sachsenmaier, Institut für Experimentelle Krebsforschung, Deutsches Krebsforschungszentrum, Heidelberg, West Germany
N.-E.L. Saris, Department of Clinical Chemistry, University of Helsinki, Helsinki, Finland
E.E. Sel’kov, Institute of Biophysics, Academy of Sciences of the USSR, Puschino, Moscow Region, USSR
A.J. Seppälä, Department of Clinical Chemistry, University of Helsinki, Helsinki, Finland
S.E. Shnoll, Moscow State University, Faculty of Physics, Moscow; and Institute of Biophysics, Academy of Sciences of the USSR, Puschino, Moscow Region, USSR
E. Trucco, Division of Biological and Medical Research, Argonne National Laboratory, Argonne, Illinois 60439
V.A. Vavilin, Institute of Biophysics, Academy of Sciences of the USSR, Puschino, Moscow Region, USSR
Gustavo Viniegra-Gonzalez, Cardiovascular Research Institute, University of California, San Francisco Medical Center, San Francisco, California 94122
H. Kaspar von Meyenburg, Department of Microbiology, Federal Institute of Technology, Zurich, Switzerland
M.K.F. Wikström, Department of Clinical Chemistry, University of Helsinki, Helsinki, Finland
J.J. Wille, Division of Biological and Medical Research, Argonne National Laboratory, Argonne, Illinois 60439
Gary Williamson, The Johnson Research Foundation, University of Pennsylvania, Philadelphia, Pennsylvania 19174
Arthur T. Winfree, Biology Department, Princeton University, Princeton, New Jersey 08540
Isao Yamazaki, Biophysics Division, Research Institute of Applied Electricity, Hokkaido University, Sapporo, Japan
Ken-nosuke Yokota, Biophysics Division, Research Institute of Applied Electricity, Hokkaido University, Sapporo,...
