Lanzuolo / Marasca Polycomb Group Proteins

Methods and Protocols
2. Auflage 2023
ISBN: 978-1-0716-3143-0
Verlag: Springer US
Format: PDF
Kopierschutz: 1 - PDF Watermark

E-Book, Englisch, 246 Seiten

Reihe: Springer Protocols

This volume explores the latest technologies used in the Polycomb Group of proteins field and helps scientists--working on PcG proteins--investigate all functions of PcG proteins in diverse cellular contexts. The chapters in this book cover topics such the distribution of histone marks by CUT&Tag in Drosophila embryos; Co-IP in mammalian cells; replication timing of gene loci in different cell cycle phases; STORM and electronmicroscopy and relative data analysis; and polycomb mediated epigenetic modification in spheroids. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Cutting-edge and comprehensive, Polycomb Group Proteins: Methods and Protocols, Second Edition is a valuable tool for all researchers looking to expand their knowledge of this developing field.

Zielgruppe

Professional/practitioner

Autoren/Hrsg.

Lanzuolo, Chiara

Marasca, Federica

Inhaltsverzeichnis

Analyzing the Genome-Wide Distribution of Histone Marks by CUT&Tag in Drosophila Embryos.- Chromatin Preparation and Chromatin Immuno-Precipitation from Drosophila Heads.- Detecting Cell Compartment Specific PRC2-RNA Interactions via UV-RIP.- Chromosome Conformation Capture Followed by Genome-Wide Sequencing (Hi-C) in Drosophila Embryos.- Physics-Based Polymer Models to Probe Chromosome Structure in Single Molecules.- Co-Immunoprecipitation (Co-IP) in Mammalian Cells.- Site Directed Mutagenesis Protocol to Determine the Role of Amino Acid Residues in Polycomb Group (PcG) Protein Function.- Isolation of Chromatin Proteins by Genome Capture.- Dynamic Interactome of PRC2-EZH1 Complex Using Tandem-Affinity Purification and Quantitative Mass Spectrometry.- Replication Timing of Gene Loci in Different Cell Cycle Phases.- Polycomb Bodies Detection in Murine Fibromuscular Stroma from Skin, Skeletal Muscles, and Aortic Tissues.- Segmentation, 3D Reconstruction, and Analysis of PcG Proteins in Fluorescence Microscopy Images in Different Cell Culture Conditions.- STORM Microscopy and Cluster Analysis for PcG Studies.- Quantitative Analysis of PcG-Associated Condensates by Stochastic Optical Reconstruction Microscopy (STORM).- Immunoelectron Microscopy Methods.- Differentiation of hPSCs to Study PRC2 Role in Cell-Fate Specification and Neurodevelopment.- Analysis of Polycomb Epigenetic Marks in HeLa Spheroids.- Establishment and Maintenance of Human CRC-Derived Organoids for PcGs Studies.