E-Book, Englisch, 212 Seiten, eBook
Yap / Frieder / Martino High Performance Computational Methods for Biological Sequence Analysis
Erscheinungsjahr 2012
ISBN: 978-1-4613-1391-5
Verlag: Springer US
Format: PDF
Kopierschutz: 1 - PDF Watermark
E-Book, Englisch, 212 Seiten, eBook
ISBN: 978-1-4613-1391-5
Verlag: Springer US
Format: PDF
Kopierschutz: 1 - PDF Watermark
Zielgruppe
Research
Autoren/Hrsg.
Weitere Infos & Material
1 Introduction.- 1.1 The Human Genome Project.- 1.2 Informatics.- 1.3 Summary.- 2 Biological Background.- 2.1 Introduction.- 2.2 Types of biological sequences.- 2.3 DNA extraction and amplification.- 2.4 Sequencing technology.- 2.5 Sequence databases.- 2.6 Summary.- 3 Sequence Analysis Algorithms.- 3.1 Introduction.- 3.2 Substitution score matrices.- 3.3 Pairwise sequence alignment.- 3.4 Multiple sequence alignment.- 3.5 Sequence similarity searching.- 3.6 Summary.- 4 High Performance Computing Architectures and Techniques.- 4.1 Introduction.- 4.2 Parallelism: what and why?.- 4.3 Types of computation.- 4.4 Classification schemes.- 4.5 Metrics.- 4.6 Performance related factors.- 4.7 Summary.- 5 Multiprocessor Sequence Alignment.- 5.1 Introduction.- 5.2 Pairwise sequence alignment.- 5.3 Multiple sequence alignment.- 5.4 Summary.- 6 Multiprocessor Sequence Similarity Searching.- 6.1 Introduction.- 6.2 Fine-grain approach.- 6.3 Coarse-grain approach.- 6.4 Summary.- 7 Biological Sequence Resources on the Internet.- 7.1 Introduction.- 7.2 Accessing tools.- 7.3 Search engines.- 7.4 Summary.- 8 Looking to the Future.- References.