Yuryev Pathway Analysis for Drug Discovery

Computational Infrastructure and Applications
1. Auflage 2008
ISBN: 978-0-470-39926-2
Verlag: John Wiley & Sons
Format: PDF
Kopierschutz: Adobe DRM (»Systemvoraussetzungen)

E-Book, Englisch, 320 Seiten, E-Book

Reihe: Wiley Series on Technologies for the Pharmaceutical

This book introduces drug researchers to the novel computational approaches of pathway analysis and explains the existing applications that can save time and money in the drug discovery process. It covers traditional computational methods and software for pathway analysis microarray, proteomics, and metabolomics. It explains pathway reconstruction of diseases and toxic states, pathway analysis in various phases, dynamic modeling of drug responses, and more. This is a core resource for drug discovery and pharmaceutical industry researchers, chemists, and biologists and for professionals in related fields.

Autoren/Hrsg.

Yuryev, Anton

Weitere Mitwirkende

Ekins, Sean

Inhaltsverzeichnis

Preface.
Contributors.
1 Introduction to Pathway Analysis (Anton Yuryev).
2 Software Infrastructure and Data Model for Pathway Analysis(Fedor Bokov and Anton Yuryev).
3 Automatic Pathway Inference in Heterogeneous BiologicalAssociation Networks (Anton Yuryev, Andrey Kalinin, and NikolaiDaraselia).
4 Algorithmic Basis for Pathway Visualization (SergeySimakov, Iaroslav Ispolatov, Sergei Maslov, and AlexanderNikitin).
5 Pathway Analysis of High-Throughput Experimental Data(Andrey Y. Sivachenko).
6 Integrative Pathway Analysis of Disease Molecular Data(Andrej Bugrim, Zoltan Dezso, Yuri Nikolsky, and TatianaNikolskaya).
7 Whole-Genome Expression Profi ling of Papillary Serous OvarianCancer: Activated Pathways, Potential Targets, and Noise (JohnFarley, Laurent L. Ozbun, and Michael J. Birrer).
8 Mammalian Proteome and Toxicant Network Analysis (SeanEkins and Craig N. Giroux).
9 Unraveling Mechanisms of Toxicity with the Power of Pathways:ToxWiz Tool as an Illustrative Example (Mark P. Kühnel,Bojana Cosovic, Goran Medic, Robert B. Russell, and GordanaApic).
10 Impact of Chemistry Information on Pathway Analysis(Sreenivas Devidas).
11 Propagation of Concentration Perturbations in EquilibriumProtein Binding Networks (Sergei Maslov and IaroslavIspolatov).
12 An Adaptive System Model of the Yeast Glucose Sensor System(Todor Vujasinovic and André SiniSaZampera).
13 Present and Future of Pathway Analysis in Drug Discovery(Anton Yuryev).
Index.

Über Autor(innen)

ANTON YURYEV, PhD, is the Senior Director of Application Science at Ariadne Genomics Inc. His department studies the topological and evolutionary properties of biological networks and develops algorithms for pathway reconstruction and analysis of high-throughput data. Dr. Yuryev has published more than thirty scientific publications and is the author of several algorithms for primer design and pathway analysis.