Bagchi / Swaroop | Genomics, Proteomics and Metabolomics in Nutraceuticals and Functional Foods | Buch | 978-1-118-93042-7 | www.sack.de

Buch, Englisch, 688 Seiten, Format (B × H): 183 mm x 260 mm, Gewicht: 1466 g

Bagchi / Swaroop

Genomics, Proteomics and Metabolomics in Nutraceuticals and Functional Foods


2. Auflage 2015
ISBN: 978-1-118-93042-7
Verlag: Wiley

Buch, Englisch, 688 Seiten, Format (B × H): 183 mm x 260 mm, Gewicht: 1466 g

ISBN: 978-1-118-93042-7
Verlag: Wiley


Functional foods and nutraceuticals have received considerable interest in the past decade largely due to increasing consumer awareness of the health benefits associated with food. Diet in human health is no longer a matter of simple nutrition: consumers are more proactive and increasingly interested in the health benefits of functional foods and their role in the prevention of illness and chronic conditions. This, combined with an aging population that focuses not only on longevity but also quality of life, has created a market for functional foods and nutraceuticals.

A fully updated and revised second edition, Genomics, Proteomics and Metabolomics in Nutraceuticals and Functional Foods reflects the recent upsurge in "omics" technologies and features 48 chapters that cover topics including genomics, proteomics, metabolomics, epigenetics, peptidomics, nutrigenomics and human health, transcriptomics, nutriethics and nanotechnology. This cutting-edge volume, written by a panel of experts from around the globe reviews the latest developments in the field with an emphasis on the application of these novel technologies to functional foods and nutraceuticals.

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Contributors xxiv

Preface xxxi

Part I Introduction 1

1 Novel Omics Technologies in Food Nutrition 3
Xuewu Zhang, Lijun You, Wei Wang, and Kaijun Xiao

1.1 Introduction 3

1.2 Transcriptomics in Nutritional Research 4

1.3 Proteomics in Nutritional Research 5

1.4 Metabolomics in Nutritional Research 7

1.5 Systems Biology in Nutritional Research 9

1.6 Conclusions 9

References 10

2 Seafood Authentication using Foodomics: Proteomics, Metabolomics, and Genomics 14
Karola Böhme, Jorge Barros-Velázquez, Pilar Calo-Mata, José M. Gallardo, and Ignacio Ortea

2.1 Introduction 14

2.2 Proteomic Approaches 15

2.3 Metabolomic Approaches 19

2.4 Genomic Approaches 20

2.5 Conclusions 25

References 26

3 A Foodomics Approach Reveals Hypocholesterolemic Activity of Red Microalgae 31
Irit Dvir, Aliza H. Stark, and Shoshana (Malis) Arad

3.1 Introduction 31

3.2 Marine Functional Foods and Supplements 32

3.2.1 Algae as a Functional Food 32

3.2.2 The Nutritional Value of Algae 32

3.3 Microalgae 33

3.3.1 Red Microalgae 34

3.3.2 Sulfated Polysaccharides from Red Microalgae 34

3.3.3 Red Microalgae as a Hypocholesterolemic Agent 35

3.4 Summary 37

References 37

Part II Genomics 41

4 Gene-Diet Interaction and Weight Management 43
Lu Qi

4.1 Introduction 43

4.2 Diet and Lifestyle Modifications in Weight Management 44

4.3 The Role of Genetic Factors in Determining Body Weight and Weight Loss 44

4.4 Gene-Diet Interactions on Body Weight and Risk of Obesity 46

4.5 Gene-Diet Interactions on Weight Loss in Randomized Clinical Trials 47

4.6 Gene-Diet Interactions on Weight Maintenance 48

4.7 Personalized Weight Management through Diet and Lifestyle Modifications 49

4.8 Summary and Concluding Remarks 50

Acknowledgments 50

References 50

5 NutrimiRomics: The Promise of a New Discipline in Nutrigenomics 53
Amitava Das and Chandan K. Sen

5.1 Introduction 53

5.2 miRomics: A New Cornerstone 56

5.3 Nutrigenomics and miR 57

References 58

6 Genomics as a Tool to Characterize Anti-inflammatory Nutraceuticals 61
Amitava Das, Scott Chaffee, and Sashwati Roy

6.1 Chronic Inflammation in Disease 61

6.1.1 Vascular Disorders 61

6.1.2 Respiratory Disorders 62

6.1.3 Gastrointestinal Tract 62

6.1.4 Neurodegenerative Diseases 63

6.1.5 Cancer 63

6.1.6 Rheumatic Diseases 63

6.2 Nutraceuticals in the Management of Chronic Inflammation 64

6.3 GeneChip TM as a Tool to Characterize the Anti-Inflammatory Properties of Nutraceuticals 65

References 68

7 Nutrigenomics, Inflammaging, and Osteoarthritis: A Review 71
Ali Mobasheri, Richard Barrett-Jolley, Caroline A. Staunton, Chris Ford, and Yves Henrotin

7.1 Introduction 71

7.2 Osteoarthritis (OA) 72

7.3 Antioxidants and the Inflammatory Microenvironment 73

7.4 Inflammaging 75

7.5 Nutrigenomics 76

7.6 Muscle Inflammation in OA 77

7.7 Conclusions 80

Acknowledgments, Competing Interests, and Disclosures 80

References 80

8 Genetic Basis of Anti-Inflammatory Properties of Boswellia Extracts 85
Golakoti Trimurtulu, Chandan K. Sen, Alluri V. Krishnaraju, Kiran Bhupathiraju, and Krishanu Sengupta

8.1 Introduction 85

8.2 Boswellia serrata 86

8.3 Mechanism of Action 87

8.4 Development of 5-LOXIN ® (BE-30) 87

8.4.1 Genetic Basis for Efficacy of 5-LOXIN ® (BE-30) 88

8.5 Gene Chip Probe Array Analysis 88

8.6 Proteomics 89

8.7 Molecular Basis of Anti-Inflammatory Properties of 5-LOXIN ® 95

8.8 In vivo Studies 96

8.9 Safety of 5-LOXIN ® 96

8.10 Clinical Efficacy of 5-LOXIN ® in the Management of Osteoarthritis 97

8.11 An Advanced 5-LOXIN ®: Aflapin ® 99

8.12 Conclusion 100

References 100

9 Cancer Chemopreventive Phytochemicals Targeting NF- B and Nrf2 Signaling Pathways 102
Hye-Kyung Na and Young-Joon Surh

9.1 Introduction 102

9.2 Molecular-Based Cancer Chemoprevention 104

9.3 Nuclear Factor-Kappa B (NF- B) 105

9.3.1 Curcumin 106

9.3.2 [6]-Gingerol 107

9.3.3 Capsaicin 107

9.3.4 Resveratrol 107

9.3.5 Quercetin 108

9.3.6 Sulforaphane 108

9.3.7 Genistein 108

9.4 Nrf2 108

9.4.1 Sulforaphane 109

9.4.2 Curcuminoids 111

9.4.3 Egcg 111

9.4.4 Allyl Sulfides 111

9.4.5 Resveratrol 112

9.4.6 Pungent Vanilloids 112

9.4.7 Lycopene 112

9.4.8 Coffee-Derived Diterpenes 113

9.4.9 Carnosol 113

9.4.10 Xanthohumol 113

9.4.11 Zerumbone 113

9.4.12 Chalcones 114

9.5 Interplay/Crosstalk between Nrf2 and NF- B Signaling Pathways 114

9.6 Conclusion 115

Acknowledgment 116

References 116

10 The Beneficial Health Effects of Fucoxanthin 122
Kazuo Miyashita and Masashi Hosokawa

10.1 Introduction 122

10.2 The Beneficial Health Effects of Carotenoids as Antioxidants 124

10.3 Anticancer Activity of Fucoxanthin 124

10.4 Anti-Obesity Effects of Fucoxanthin 126

10.5 Anti-Diabetic Effects of Fucoxanthin 127

10.6 Conclusion 130

References 131

11 Nutrition, Genomics, and Human Health: A Complex Mechanism for Wellness 135
Okezie I. Aruoma

11.1 Introduction 135

11.2 Nutrition Sciences and Clinical Applications in Nutritional Genomics 136

References 139

12 Application of Genomics and Bioinformatics Analysis in Exploratory Study of Functional Foods 140
Kohsuke Hayamizu and Aiko Manji

12.1 Introduction 140

12.2 Analysis Tools 141

12.2.1 GeneSpring GX 141

12.2.2 Bioconductor 141

12.2.3 Others 141

12.3 Interpretation Tools 142

12.3.1 Go Analysis Tools 142

12.3.2 Pathway Analysis Tools 142

12.3.3 Association Network Analysis Tools 143

12.4 Application Example of Kale (Brassica oleracea L. Var Acephala DC) 143

12.4.1 Animal Study and DNA Microarray Analysis 144

12.4.2 Data Analysis 144

12.4.3 Result 146

12.5 Conclusion 148

References 149

13 Omics Analysis and Databases for Plant Science 150
Masaaki Kobayashi, Hajime Ohyanagi, and Kentaro Yano

13.1 Introduction 150

13.2 NGS Technologies and Data Processing 151

13.3 De novo Plant Genome Assembly by NGS 151

13.3.1 Basics of Plant Genome Assembly 151

13.3.2 Plant Genome Assembly by NGS Short Reads 152

13.3.3 Hybrid-Type Assembly 152

13.4 Plant Genome Resequencing by NGS 153

13.4.1 Conventional Resequencing Technologies 153

13.4.2 GBS/RAD-Seq 154

13.5 Plant Transcriptome Analysis by NGS 154

13.5.1 Transcriptome Analysis with Reference Genome Sequences 154

13.5.2 Reference-Free Transcriptome Analysis 154

13.6 Plant Genome and Annotation Databases 154

13.6.1 TAIR (Arabidopsis) 154

13.6.2 RAP-DB (Rice) 155

13.6.3 Other Plants 155

13.7 Plant Omics Databases 155

13.7.1 Transcriptome Databases 155

13.7.2 Gene Expression Network Databases 156

13.7.3 Metabolic Pathway Databases 156

13.7.4 Other Databases for Omics Integration 156

13.8 Conclusion 156

References 157

14 Synergistic Plant Genomics and Molecular Breeding Approaches for Ensuring Food Security 160
Shouvik Das and Swarup K. Parida

14.1 Introduction 160

14.2 Plant Genomics, Transcriptomics, Proteomics, and Metabolomics Resources 161

14.3 Molecular Markers in Plant Genome Analysis 163

14.3.1 Microsatellite Markers 164

14.3.2 Single Nucleotide Polymorphism (SNP) Markers 166

14.4 Identification of Functionally Relevant Molecular Tags Governing Agronomic Traits 167

14.4.1 Plant Genetic Resources Rich in Trait Diversity 167

14.4.2 High-Throughput Phenotyping 168

14.4.3 High-Throughput Marker Genotyping 168

14.4.4 Identification and Mapping of QTLs/Genes 168

14.4.5 Trait Association Mapping 170

14.5 Genomics-Assisted Crop Improvement 170

References 175

15 Combinatorial Approaches Utilizing Nutraceuticals in Cancer Chemoprevention and Therapy: A Complementary Shift with Promising Acuity 185
Madhulika Singh and Yogeshwer Shukla

15.1 Introduction 185

15.2 Nutraceuticals 187

15.3 Nutraceuticals and Key Events in Cancer Development 189

15.3.1 Inflammation 189

15.3.2 Oxidative Stress 189

15.3.3 Antiproliferation 190

15.3.4 Cell-Cycle Arrest 190

15.3.5 Apoptosis 190

15.3.6 Transforming Growth Factor-ß (TGF-ß)/Smad Signaling Pathway 191

15.3.7 ß-Catenin 191

15.4 Nutraceuticals in Combinatorial Therapy of Human Cancer: A Pledge of the Future 191

15.4.1 Nutraceuticals in Cruciferous Vegetables: Potential for Combination Therapy 191

15.4.2 Indole-3-Carbinol (I3C) and Combinations 192

15.4.3 Phenethylisothiocyanate (PEITC) and Combinations 192

15.4.4 Sulforaphane (SFN) and Combinations 193

15.4.5 Synergism among Cruciferous Compounds 194

15.4.6 Combinations of Cruciferous Compounds with Conventional Cancer Chemotherapeutics 194

15.5 Curcumin: Potential for Combination Therapy 195

15.5.1 Curcumin with Xanthorrhizol 196

15.5.2 Curcumin with Docosahexaenoic Acid (DHA, Polyunsaturated Fatty Acids Present in Fish Oil) 196

15.5.3 Curcumin and Genistein 196

15.5.4 Curcumin and Resveratrol 197

15.5.5 Curcumin and EGCG 197

15.5.6 Curcumin and Citrus Limonoids 197

15.5.7 Curcumin with Apigenin 197

15.5.8 Curcumin and Triptolide 198

15.5.9 Combinations of Curcumin with Conventional Cancer Chemotherapeutics 198

15.6 Resveratrol: Potential for Combination Therapy 199

15.6.1 Resveratrol and Genistein 199

15.6.2 Resveratrol and Piperine 200

15.6.3 Resveratrol and Black Tea Polyphenols 200

15.6.4 Resveratrol and Melatonin 200

15.6.5 Synergism among Resveratrol and Other Grapes’ Polyphenols 200

15.6.6 Resveratrol in Combination with Anticancer Drugs 201

15.7 Lycopene (a Carotenoid): Potential for Combinations Therapy 202

15.7.1 Lycopene and Genistein 202

15.7.2 Lycopene and Sc-allyl Cysteine 202

15.7.3 Lycopene and 1,25-Dihydroxyvitamin D3 202

15.7.4 Lycopene with Selenium 203

15.7.5 Lycopene and FruHis (Ketosamine) 203

15.7.6 Combination of Lycopene with Cancer Chemotherapeutic Drugs 203

15.8 Soy Nutraceuticals: Potential for Combination Therapy 203

15.8.1 Genistein and Daidzein 203

15.8.2 Genistein and 3,3’-Diindolylmethane 203

15.8.3 Genistein and Capsaicin 204

15.8.4 Combination of Genistein with Conventional Cancer Chemotherapeutics 204

15.9 Tea Polyphenols Potential for Combinatorial Therapy 204

15.9.1 Green Tea and Quercetin 205

15.9.2 EGCG and Soy Phytochemical 205

15.9.3 EGCG and Thymoquinone 205

15.9.4 EGCG and Trichostatin A 205

15.9.5 EGCG and Luteolin 205

15.9.6 EGCG and Pterostilbene (a Stilbenoid Derived from Blueberries) 205

15.9.7 EGCG and Panaxadiol 206

15.9.8 Polyphenon E 206

15.9.9 EGCG with Conventional Cancer Chemotherapy 206

15.10 D-Limonene: Potential for Combination Therapy 207

15.10.1 D-Limonene and Chemotherapeutic Drugs 207

15.11 Miscellaneous: Novel Nutraceuticals Formulation 207

15.11.1 Coltect: A Dietary Supplement 207

15.11.2 BreastDefend: A Natural Dietary Supplement 208

15.11.3 ProstaCaid: A Dietary Supplement 208

15.12 Conclusion 208

References 208

16 Nutrigenomic Approaches to Understanding the Transcriptional and Metabolic Responses of Phytochemicals to Diet-Induced Obesity and its Complications 218
Myung-Sook Choi and Eun-Young Kwon

16.1 Introduction 218

16.2 Nutrigenomics 219

16.2.1 Tools for Bioinformatics and Systems Biology 219

16.3 Obesity and Cardiometabolic Syndrome 222

16.3.1 Obesity 222

16.3.2 Inflammation and Insulin Resistance in Obesity 223

16.3.3 Obesity and Cardiometabolic Syndrome: A Possible Role for Nutrigenomics 224

16.4 Anti-Obesity Action of Luteolin 225

16.5 Conclusion 226

Acknowledgments 226

References 226

17 Going Beyond the Current Native Nutritional Food Through the Integration of the Omic Data in the Post-Genomic Era: A Study in (Resistant) Starch Systems Biology 230
Treenut Saithong and Saowalak Kalapanulak

17.1 Introduction 230

17.2 Starch and its Yield Improvement in Plants 231

17.3 An Extension of the (Resistant) Starch Yield Improvement Research on the Systems Biology Regime: Integration of the Omic Data from the Post-Genomic Technology 233

References 239

Part III Proteomics 243

18 Proteomics and Nutrition Research: An Overview 245
Arun K. Tewari, Sudhasri Mohanty, and Sashwati Roy

18.1 Introduction 245

18.2 Proteomics 245

18.2.1 Proteomics Tools and Technologies 246

18.3 Nutrition and Proteins 246

18.4 Nutritional Biomarkers 248

18.5 Nutritional Bioactives 248

18.5.1 Wheat Proteins 248

18.5.2 Vitamins 248

18.5.3 Glucose 249

18.5.4 Wine and Soy Nutrients 249

18.6 Diet-Based Proteomics Application to Animal Products (Livestock Applications) 249

18.7 Proteomics and Food Safety 249

18.8 Conclusion 249

18.9 Significance 250

Conflict of Interests 250

References 250

19 Proteomics Analysis for the Functionality of Toona sinensi


Debasis Bagchi, Ph.D., MACN, CNS, MAIChE
University of Houston College of Pharmacy, Houston, TX, USA

Anand Swaroop, Ph.D.
Cepham Inc., Piscataway, NJ, USA

Manashi Bagchi, Ph.D., FACN
Cepham Inc., Piscataway, NJ, USA



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